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Release Notes

v2.5.0 series come with new and improved sequence, structure, and dynamics analysis features. See release notes for details.

How to Cite

Bakan A, Meireles LM, Bahar I ProDy: Protein Dynamics Inferred from Theory and Experiments
Bioinformatics 2011 27(11):1575-1577.

Bakan A, Dutta A, Mao W, Liu Y, Chennubhotla C, Lezon TR, Bahar I Evol and ProDy for Bridging Protein Sequence Evolution and Structural Dynamics
Bioinformatics 2014 30(18):2681-2683.

Zhang S, Krieger JM, Zhang Y, Kaya C, Kaynak B, Mikulska-Ruminska K, Doruker P, Li H, Bahar I ProDy 2.0: Increased scale and scope after 10 years of protein dynamics modelling with Python
Bioinformatics 2021 37(20):3657-3659.

Reference Manual¶

  • Atomic Data
  • Chromatin Dynamics Analysis
  • Compounds Analysis
  • Database Support
  • Dynamical Domain Decomposition
  • Dynamics Analysis
  • Ensemble Analysis
  • KDTree
  • Measurement Tools
  • Protein Structure
  • Sequence Analysis
  • Trajectory I/O
  • ProDy Utilities
  • Applications API
  • Configuration & Logging

© Copyright 2010-2015, University of Pittsburgh. Last updated on Feb 06, 2025. Created using Sphinx 1.3.5.

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