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v2.5.0 series come with new and improved sequence, structure, and dynamics analysis features. See release notes for details.
Bakan A, Meireles LM, Bahar I ProDy: Protein Dynamics Inferred from Theory and Experiments Bioinformatics 2011 27(11):1575-1577.
Bakan A, Dutta A, Mao W, Liu Y, Chennubhotla C, Lezon TR, Bahar I Evol and ProDy for Bridging Protein Sequence Evolution and Structural Dynamics Bioinformatics 2014 30(18):2681-2683.
Zhang S, Krieger JM, Zhang Y, Kaya C, Kaynak B, Mikulska-Ruminska K, Doruker P, Li H, Bahar I ProDy 2.0: Increased scale and scope after 10 years of protein dynamics modelling with Python Bioinformatics 2021 37(20):3657-3659.
This module contains ProDy applications.
prody_anm() prody_gnm() prody_pca()
prody_anm()
prody_gnm()
prody_pca()
prody_align() prody_biomol() prody_blast() prody_catdcd() prody_contacts() prody_fetch() prody_select()
prody_align()
prody_biomol()
prody_blast()
prody_catdcd()
prody_contacts()
prody_fetch()
prody_select()
evol_search() evol_fetch() evol_filter() evol_refine() evol_merge() evol_conserv() evol_coevol() evol_occupancy() evol_rankorder()
evol_search()
evol_fetch()
evol_filter()
evol_refine()
evol_merge()
evol_conserv()
evol_coevol()
evol_occupancy()
evol_rankorder()
