v2.5.0 series come with new and improved sequence, structure, and dynamics analysis features. See release notes for details.

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Pfam Search¶

Pfam search application.

evol_search(query, **kwargs)[source]¶

Search Pfam with given query.

Parameters:	query – protein UniProt ID or sequence, a PDB identifier, or a sequence file, where sequence have no gaps and 12 or more characters

Sequence Search Options

Parameters:	search_b (bool) – search Pfam-B families skip_a (bool) – do not search Pfam-A families ga (bool) – use gathering threshold evalue (float) – e-value cutoff, must be less than 10.0 timeout (int) – timeout in seconds for blocking connection attempt, default is `60`

Output Options

Parameters:	outname (str) – name for output file, default is standard output delimiter (str) – delimiter for output data columns, default is `'\t'`