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Release Notes

v2.5.0 series come with new and improved sequence, structure, and dynamics analysis features. See release notes for details.

How to Cite

Bakan A, Meireles LM, Bahar I ProDy: Protein Dynamics Inferred from Theory and Experiments
Bioinformatics 2011 27(11):1575-1577.

Bakan A, Dutta A, Mao W, Liu Y, Chennubhotla C, Lezon TR, Bahar I Evol and ProDy for Bridging Protein Sequence Evolution and Structural Dynamics
Bioinformatics 2014 30(18):2681-2683.

Zhang S, Krieger JM, Zhang Y, Kaya C, Kaynak B, Mikulska-Ruminska K, Doruker P, Li H, Bahar I ProDy 2.0: Increased scale and scope after 10 years of protein dynamics modelling with Python
Bioinformatics 2021 37(20):3657-3659.

ProDy Documentation¶

  • ProDy Manual
  • ProDy Tutorial
  • NMWiz Tutorial
  • Evol Tutorial
  • Druggability Suite
  • Elastic Network Models
  • Ensemble Analysis
  • Structure Analysis
  • Trajectory Analysis
  • Conformational Sampling
  • Collective Molecular Dynamics (CoMD) Simulations
  • Membrane ANM
  • Stiffness Matrix Calculations
  • Perturbation Response Scanning Calculations
  • Signature Dynamics
  • Cryo-EM Dynamics (CryoDy)
  • Adaptive ANM
  • Essential Site Scanning Analysis (ESSA)
  • ClustENMD and ANMD
  • Interactions and Stability (InSty) analysis
  • WatFinder - water bridges within protein structure detector
  • Scipion-EM-ProDy
  • Index
  • Module Index
  • Search Page

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