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How to Cite

Bakan A, Nevins N, Lakdawala AS, Bahar I Druggability Assessment of Allosteric Proteins by Dynamics Simulations in the Presence of Probe Molecules
J Chem Theory Comput 2012 8(7):2435-2447.

Druggability Suite¶

Learn how to use Druggability Suite for setting up and analyzing druggability simulations.

You can also read this tutorial in PDF format.

Plug-in files: ZIP TGZ

Tutorial files: ZIP TGZ

  • Introduction
    • Installation
    • DruGUI Plugin
    • Tutorial Files
    • How to Cite
  • Background
    • Method & Theory
  • Probe Molecules
    • Topology & Parameter
  • Simulation Setup
    • Input Files
    • Options & Parameters
    • Output Files
    • Simulation
  • Probe Grid Calculation
    • Input Files
    • Options & Parameters
    • Output Files
  • Druggability Analysis
    • Input Files
    • Options & Parameters
    • Output Files
  • Analyze a Specific Site
    • Input Files
    • Options & Parameters
    • Output Files
  • Visualization & Analysis
    • Input Files
    • Options & Parameters
    • Probe binding spots
    • Druggable Sites
    • Visualize Probe Grids
  • Incorporate CGenFF Molecules
  • License

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