Cryo-EM Dynamics (CryoDy)

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Tutorial files: ZIP TGZ

• Introduction
  • Required Programs
  • Recommended Programs
  • Getting Started
• Processing Cryo-EM Electron Density Maps
  • Parse Density Map
  • Map pseudo-atoms to PDB atomic model
• Elastic Network Model Analysis
  • Compare results with atomic models
• Dynamical Domain Decomposition

Acknowledgments

Continued development of Protein Dynamics Software ProDy and associated programs is partially supported by the NIH-funded R01 GM139297 entitled “Toward a deeper understanding of allostery and allotargeting by computational approaches”.