ProDy 2.2 Series
- 2.2.0 (May 19, 2022)

Release Notes

v2.4.1 series come with new and improved sequence, structure, and dynamics analysis features. See release notes for details.

How to Cite

Bakan A, Meireles LM, Bahar I ProDy: Protein Dynamics Inferred from Theory and Experiments
Bioinformatics 2011 27(11):1575-1577.

Bakan A, Dutta A, Mao W, Liu Y, Chennubhotla C, Lezon TR, Bahar I Evol and ProDy for Bridging Protein Sequence Evolution and Structural Dynamics
Bioinformatics 2014 30(18):2681-2683.

Zhang S, Krieger JM, Zhang Y, Kaya C, Kaynak B, Mikulska-Ruminska K, Doruker P, Li H, Bahar I ProDy 2.0: Increased scale and scope after 10 years of protein dynamics modelling with Python
Bioinformatics 2021 37(20):3657-3659.

ProDy 2.2 Series¶

2.2.0 (May 19, 2022)

2.2.0 (May 19, 2022)¶

Bug Fixes and Improvements:

Updates to :function:`.parseScipionModes`` to use sqlite and xmd metadata files

and handle eigenvalues

Actual fix to logging so LOGGER.progress doesn’t override logging level

Updates to the PCA app to better handle number of modes for Scipion

New arguments sparse, kdtree and turbo for ClustENM, allowing

better control of ANM calculations.

Another bug fix for mmCIF header parsing

Bug fix for parsing CONECT bond records from PDB files

Full Changelog: https://github.com/prody/ProDy/compare/v2.1.2...v2.2.0