Citing

When using ProDy or NMWiz in published work, please cite:

Bakan A, Meireles LM, Bahar I.

ProDy: Protein Dynamics Inferred from Theory and Experiments.

Bioinformatics 2011 27(11):1575-1577.

Bakan A, Dutta A, Mao W, Liu Y, Chennubhotla C, Lezon TR, Bahar I.

Evol and ProDy for Bridging Protein Sequence Evolution and Structural Dynamics.

Bioinformatics 2014 30(18):2681-2683.

Zhang S, Krieger JM, Zhang Y, Kaya C, Kaynak B, Mikulska-Ruminska K, Doruker P, Li H, Bahar I.

ProDy 2.0: Increased Scale and Scope after 10 Years of Protein Dynamics Modelling with Python.

Bioinformatics 2021 37(20):3657-3659.

When using pairwise2 or KDTree modules in published work, please cite:

Cock PJ, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B, de Hoon MJ.

Biopython: freely available Python tools for computational molecular biology and bioinformatics.

Bioinformatics 2009 25(11):1422-3.